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A comparative account of protein-protein interaction resources, feature-validations and application-based categorizations

Bacteriome.org - Bacterial protein interaction database

Tool nameBacteriome.org - Bacterial protein interaction database
URLhttp://www.bacteriome.org
Important featuresA web-resource that provides domain interactions along with PPIs. Provides protein interactions along with the complexes involved. Protein interactions specific to a biological process (e.g., apoptosis, cell cycle) can also be obtained. Provides interactions along with their structural relationships.
CitationsSu C, Peregrin-Alvarez JM, Butland G, Phanse S, Fong V, Emili A, Parkinson J. Bacteriome.org--an integrated protein interaction database for E. coli. Nucleic Acids Res. 2008 Jan;36(Database issue):D632-6. Epub 2007 Oct 16. PubMed PMID: 17942431; PubMed Central PMCID: PMC2238847.
Year of publication2007
Rank by usage frequency100
Comments
FunctionPredicted PPIs based on gene expression, Predicted PPIs based on co-expression, Predicted PPIs based on genomic data, Predicted PPIs based on gene ontology (GO), Predicted PPIs based on gene fusion, PPIs with their functional associations, PPIs along with supporting evidences, PPIs along with their evolutionary relationships, PPIs along with the complexes involved, PPIs specific to microbes, PPIs along with their structural relationships, PPIs for given protein sequence (BLAST search), Protein-domain/ domain-domain interactions
Categoryhttp://www.bacteriome.org, A web-resource that provides domain interactions along with PPIs. Provides protein interactions along with the complexes involved. Protein interactions specific to a biological process (e.g., apoptosis, cell cycle) can also be obtained. Provides interactions along with their structural relationships., Su C, Peregrin-Alvarez JM, Butland G, Phanse S, Fong V, Emili A, Parkinson J. Bacteriome.org--an integrated protein interaction database for E. coli. Nucleic Acids Res. 2008 Jan;36(Database issue):D632-6. Epub 2007 Oct 16. PubMed PMID: 17942431; PubMed Central PMCID: PMC2238847., 2007, 100
Online/downloadable
OnlineOnline
Downloadable
Registration required
FreeFree
Paid
Working statusFunctional
FunctionPredicted PPIs based on co-localization
Category
Tool_frequency

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